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Andrew J. Millar – complete bibliography

Jump to: 1991-1995, 1996-2000, 2001-2007, 2008-present.

Present to 2008 (reverse chronological order)

  1.  Liverani S., Anderson P.E., Edwards K.D., Millar A.J. and Smith J.Q. (2009) Efficient Utility-based Clustering over High Dimensional Partition Spaces. Journal of Bayesian Analysis, in press.
  2. Daly R., Edwards K.D., O'Neill J.S., Aitken S., Millar A.J. and Girolami, M. (2009) Using Higher-Order Dynamic Bayesian Networks to Model Periodic Data from the Circadian Clock of Arabidopsis thaliana. Pattern Recognition in Bioinformatics, PRIB 2009, accepted for publication in Lecture Notes in Bioinformatics.
  3. A.M. Davis, A. Hall, A.J. Millar, C. Darrah and S.J. Davis (2009) Protocol: Streamlined sub-protocols for floral-dip transformation and selection of transformants in Arabidopsis thaliana. Plant Methods 5:3. Link.
  4. J.D. Salazar, J. Foreman, I.A. Carre, D.A. Rand and A.J. Millar (2008). Mathematical Model of the Epigenetic Control of Vernalisation in Arabidopsis thaliana. Acta Horticulturae Number 803, November 2008. Proceedings of the Eighth International Symposium of Modelling in Fruit Research and Orchard Management. Editor J. Samietz. International Society for Horticultural Science (ISHS). ISBN 978-90-66056-81-7; ISSN 0567-7572. Link.
  5. Finkenstadt, B., Heron, E.A., Komorowski, M., Edwards, K., Tang, S., Harper, C.V., Davis, J.R., White, M.R., Millar, A.J. and Rand, D.A. (2008) Reconstruction of transcriptional dynamics from gene reporter data using differential equations, Bioinformatics 24: 2901-2907. Link.
  6. Grzegorczyk, M.**, Husmeier, D.**, Edwards, K.D., Ghazal, P., and Millar, A.J. (2008). Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler. Bioinformatics 24, 2071-2078. **corresponding authors. PDF. Link.
  7. Akman O.E., Locke J.C.W., Tang S., Carré I.A., Millar A.J. & Rand D.A. (2008) Isoform switching facilitates period control in the Neurospora crassa circadian clock. Molecular Systems Biology, 4: 164. Online 12 Feb 2008, doi: 4100210. Corrigendum.
  8. J. Aleksic, F. Bizzari, Y. Cai, B. Davidson, K. de Mora, S. Ivakhno, S.L. Seshasayee, J. Nicholson, J. Wilson, A. Elfick, C. French, L. Kozma-Bognar, H. Ma and A. Millar (2007) Development of a novel biosensor for the detection of arsenic in drinking water. IET Synthetic Biology 1, 87–90. Online

2001 to 2007 (chronological order)

  1. Davis S.J. and Millar A.J. (2001) Watching the hands of the Arabidopsis biological clock. Genome Biology, 2, R1008.1-1008.4. PDF
  2. Tóth R., Kevei E., Hall A., Millar A.J., Nagy F., Kozma-Bognár, L. (2001) Circadian clock-regulated expression of phytochrome and cryptochrome genes in Arabidopsis thaliana. Plant Physiology, 127, 1607-1616. PDF
  3. Hall A., Kozma-Bognár L., Tóth R., Nagy F. and Millar A.J. (2001) Conditional circadian regulation of PHYTOCHROME A gene expression. Plant Physiology, 127, 1808-1818. PDF
  4. Millar A.J. (2001) Light responses of a plastic plant. Nature Genetics, 29, 357-358. PDF
  5. Salathia N., Edwards K. and Millar A.J. (2002) QTL for timing: a natural diversity of clock genes. Trends in Genetics, 18, 115-118. PDF
  6. Thain S.C., Murtas G., Lynn J.R., McGrath R.B. and Millar A.J. (2002) The circadian clock that controls gene expression in Arabidopsis is tissue-specific. Plant Physiology, 130, 102-110. PDF
  7. Doyle M.R.*, Davis S.J.*, Bastow R.M., McWatters H.G., Kozma-Bognár L., Nagy F., Millar A.J.** and Amasino R.M.** (2002) ELF4, a gene controlling circadian rhythms and flowering time in Arabidopsis thaliana. Nature, 419, 74-77. *joint first authorship, **corresponding authors. PDF

    Featured in: Faculty of 1000: evaluations for Doyle MR et al Nature 2002 Sep 5 419 (6902) :74-7. F1000 factor 3.2. http://www.f1000biology.com/article/12214234/evaluation
     
  8. Hall A., Kozma-Bognár L., Bastow R.M., Nagy F. and Millar A.J. (2002) Distinct regulation of CAB and PHYB gene expression by similar circadian clocks. Plant Journal, 32, 529-537. PDF
  9. Staiger D., Allenbach L., Salathia N., Fiechter V., Davis S.J., Millar A.J., Chory J., and Fankhauser C. (2003) The Arabidopsis SRR1 gene mediates phyB signaling and is required for normal circadian clock function. Genes & Development, 17, 256–268. PDF
  10. Eriksson ME, Millar AJ (2003) The Circadian Clock. A Plant's Best Friend in a Spinning World. Plant Physiol 132:732-738. PDF
  11. Millar AJ (2003) A suite of photoreceptors entrains the plant circadian clock. J Biol Rhythms 18:217-226. PDF
  12. Eriksson M.E.*, Hanano S.*, Southern M.M.*, Hall A., Millar A.J. (2003) Response regulator homologues have complementary, light-dependent functions in the Arabidopsis circadian clock. Planta 218:159-162. *joint first authorship. PDF
  13. Hall A.*, Bastow R.M.*, Davis S.J., Hanano S., McWatters H.G., Hibberd V., Doyle M.R., Sung S., Halliday K.J., Amasino R.M., Millar A.J. (2003) The TIME FOR COFFEE (TIC) gene maintains the amplitude and timing of Arabidopsis circadian clocks. Plant Cell 15: 2719-2729. *joint first authorship. PDF
  14. Millar AJ (2004) Input signals to the plant circadian clock. J Exp Bot 55: 277-283. Full text link PDF
  15. Bain EL, Millar AJ, Turner MS. (2004) The wild type circadian period of Neurospora is encoded in the residual network of the null frq mutants. J Theor Biol 229: 413-420. PDF
  16. Rand DA, Shulgin BV, Salazar D, Millar AJ. (2004) Design principles underlying circadian clocks. J Roy Soc Interface 1: 119-130. doi:10.1098/rsif.2004.0014. Full-text link PDF
  17. Thain S.C.*, Vandenbussche F.*, Laarhoven LJJ, Dowson-Day M.J., Wang Z-Y, Tobin E.M., Harren F.J.M., Millar A.J. and Van der Straeten D. (2004) Circadian rhythms of ethylene emission in Arabidopsis. Plant Physiology 136: 3751-3761. *joint first authorship PDF

    Featured in: Faculty of 1000: evaluations for Thain SC et al Plant Physiol 2004 Nov 136 (3) :3751-61. F1000 factor 3.0. http://www.f1000biology.com/article/15516515/evaluation
     
  18. Locke J.C., Millar A.J., Turner, M.S. (2005) Modelling genetic networks with noisy and varied experimental data: the circadian clock in Arabidopsis thaliana. J Theor Biol 234: 383-393. PDF
  19. Edwards K.D., Lynn J.R., Gyula P., Nagy F., Millar, A.J. (2005) Natural allelic variation in the temperature compensation mechanisms of the Arabidopsis thaliana circadian clock. Genetics 170: 387-400. doi: 10.1534/genetics.104.035238. PDF
  20. Southern, M.M., Millar, A.J. (2005) Circadian genetics in the model higher plant, Arabidopsis thaliana. Methods Enzymol 393, 23-35. 
  21. Locke J.C.W., Southern M.M., Kozma-Bognar L., Hibberd V., Brown P.E., Turner M.S., Millar A.J. (2005) Extension of a genetic network model by iterative experimentation and mathematical analysis. Molecular Systems Biology, 1:13. doi: 10.1038/msb4100018. PDF

    Featured in: Mol. Syst. Biol. featured article,
    BioMed Central Research Highlight (www.biomedcentral.com), Faculty of 1000: evaluations for Locke JCW et al Mol Syst Biol 2005 Jun 28. F1000 factor 6.0, 9.0. http://www.f1000biology.com/article/nonpub113939/evaluation, http://www.f1000biology.com/article/nonpub114960/evaluation.  ‘Hidden Jewels Top 10’ for all of biology, ‘Most Viewed Top 10’ in Physiology, Plant Biology, Genomics and Genetics.
    Genome Biology 2005, 6(8):340, featured F1000 article.
     
  22. Dodd A.N., Salathia N., Hall A., Kévei E., Tóth R., Nagy F., Hibberd J.M., Millar A.J., Webb A.A.R. (2005) Plant circadian clocks increase photosynthesis, growth, survival and competitive advantage. Science, 309:630-633. PDF

    Featured in: Faculty of 1000: evaluations for Dodd AN et al Science 2005 Jul 22 309 (5734) :630-3. F1000 factor 6.5. http://www.f1000biology.com/article/16040710/evaluation. ‘Top 10’ rated for all of biology.
     
  23. Rand DA, Shulgin BV, Salazar D, Millar AJ. (2006) Uncovering the design principles of circadian clocks: mathematical analysis of flexibility and evolutionary goals. J Theor Biol, 238:616-635. Published online August 2005. PDF.
  24. Viczián A, Kircher S, Fejes E, Millar AJ, Schäfer E, Kozma-Bognár L, Nagy F (2005) Functional characterisation of PHYTOCHROME INTERACTING FACTOR 3 for the Arabidopsis thaliana circadian clockwork. Plant Cell Physiol, 46:1591-602. doi:10.1093/pcp/pci175. PDF.
  25. Edwards KD, Anderson PE, Hall A, Salathia NS, Locke JCW, Lynne JR, Straume M, Smith JQ, Millar AJ (2006) FLOWERING LOCUS C mediates natural variation in the high temperature response of the Arabidopsis circadian clock. Plant Cell, 18: 639-650. doi:10.1105/tpc.105.038315. Full PDF. Array data.

    Faculty of 1000 Biology: evaluations for Edwards KD et al Plant Cell 2006 Feb 10. F1000 factor 3.0. http://www.f1000biology.com/article/16473970/evaluation.
     
  26. Kevei E, Gyula P, Hall A, Kozma-Bognár L, Kim WY, Eriksson ME, Tóth R, Hanano S, Fehér B, Southern MM, Bastow RM, Viczián A, Hibberd V, Davis SJ, Somers DE, Nagy R, Millar AJ (2006) Forward genetic analysis of the circadian clock separates the multiple functions of ZEITLUPE. Plant Physiol 140: 933-945. PDF
  27. Gould PD, Locke JCW, Larue C, Southern MM, Davis SJ, Hanano S, Moyle R, Milich R, Putterill J, Millar AJ**, Hall A** (2006) The molecular basis of temperature compensation in the Arabidopsis circadian clock. Plant Cell, 18:1177-1187. Main PDF. **corresponding authors.

    Featured in: Plant Cell "In This Issue" - Nancy A. Eckardt (2006) A Wheel within a Wheel: Temperature Compensation of the Circadian Clock. Plant Cell 2006 18: 1105-1108. PDF
     

  28. Salathia N, Davis SJ**, Lynn JR, Michaels SD, Amasino RM and Millar AJ** (2006) FLOWERING LOCUS C dependent and independent interactions in autonomous and vernalization regulation of the circadian clock. BMC Plant Biology, 6:10. Open Access article - Link. Main PDF. Supplementary data. **corresponding authors.

    BMC “Highly Accessed” article (>850 accesses in first 30 days), featured article.
     

  29. Locke JCW, Kozma-Bognar L, Gould PD, Fehér B, Kevei E, Nagy F, Turner MS, Hall A**, Millar AJ** (2006) Experimental validation of a predicted feedback loop in the multi-oscillator clock of Arabidopsis thaliana. Molecular Systems Biology, 2:59. **corresponding authors. Open Access article - Link. Full PDF. Model SBML.

    Featured in News and Views article "Systems biology flowering in the plant clock field" by Hiroki R Ueda. Open Access article - Link. PDF.
     
  30. Salathia N, Lynn JR, Millar AJ** and King GJ** (2007). Detection and resolution of genetic loci affecting circadian period in Brassica oleracea. Theor Appl Genet. 114: 683-92. Online 13 Dec 2006. Link. PDF. **corresponding authors.

    Featured in: Faculty of 1000 Biology: evaluations for Salathia N et al Theor Appl Genet 2007 Feb 114 (4) :683-92. F1000 factor 3.0. http://www.f1000biology.com/article/id/1064879/evaluation
     
  31. Edwards K.D. and Millar A.J. (2007) Analysis of Circadian Leaf Movement Rhythms in Arabidopsis thaliana. In 'Circadian Rhythms Methods and Protocols',  Series: Methods in Molecular Biology, 362:103-114. Humana Press ISBN13: 978-1-59745-257-1 Link
  32. McWatters H.G., Kolmos E., Hall A., Doyle M.R., Amasino R.M., Gyula P., Nagy F., Millar A.J., Davis S.J. (2007)  ELF4 Is Required for Oscillatory Properties of the Circadian Clock. Plant Physiology, 144:391-401. Full PDF.
  33. Ding Z., Millar A.J., Davis A.M., Davis S.J. (2007) TIME FOR COFFEE Encodes a Nuclear Regulator in the Arabidopsis thaliana Circadian Clock. Plant Cell, 19:1522-1536. Link.
  34. Kevei E, Gyula P, Feher B, Toth R, Viczian A, Kircher S, Rea D, Dorjgotov D, Schafer E, Millar AJ, Kozma-Bognar L, Nagy F (2007) Arabidopsis thaliana circadian clock is regulated by the small GTPase LIP1. Curr Biol 17: 1456-64. PDF. Link

    Featured in: Dispatch "Circadian Rhythms: Rho-Related Signals in Time-Specific Light Perception" E. Kolmos and S.J. Davis. Current Biology, 17, R808-R810.

    Faculty of 1000 Biology: evaluations for Kevei E et al Curr Biol 2007 Sep 4 17:1456-64 F1000 factor 3.0. http://www.f1000biology.com/article/id/1091171/evaluation

     

1996 through 2000

  1. White M.R.H., Wood C.D. and Millar A.J. (1996) Real-time imaging of transcription in living cells and tissues. Biochem. Soc. Trans. 24, 411S.
  2. Hicks K.A., Millar A.J., Carré I.A., Somers D.E., Straume M., Meeks-Wagner D. R. and Kay S.A. (1996) Conditional circadian dysfunction of the Arabidopsis early-flowering 3 mutant. Science, 274, 790-792.
  3. **Millar A.J. and Kay S.A. (1996). Integration of circadian and phototransduction pathways in the network controlling CAB gene transcription in Arabidopsis. Proc. Natl. Acad. Sci. USA, 93, 15491-15496. **corresponding author PDF
  4. Millar A.J. and Kay S.A. (1997). The genetics of phototransduction and circadian rhythms in Arabidopsis. BioEssays, 19 (3) 209-214.
  5. Millar A.J. (1997). PASsing time. Current Biology, 7, R474-R476.
  6. Bischoff F., Millar A.J., Furuya M. and Kay S.A. (1997). Phytochrome-induced intercellular signalling activates CAB:luciferase gene expression. Plant J., 12, 839-849.
  7. Anderson S.L., Somers D.E., Millar A.J., Hanson K., Chory J. and Kay S.A (1997). Attenuation of phytochrome A and B signaling pathways by the Arabidopsis circadian clock. Plant Cell, 9, 1727-1743.
  8. Lumsden P.J. and Millar A.J. (eds.) (1998) "Biological Rhythms and Photoperiodism in Plants". 284 pages. BIOS Scientific: Oxford; including …
  9. Millar A.J. (1998) The cellular organisation of circadian rhythms in plants: Not one but many clocks.
  10. Millar A.J. (1998) Molecular intrigue between phototransduction and the circadian clock. Annals of Botany 81: 581-587.
  11. Whitelam G.C. and Millar A.J. (1998) Light Regulation and Biological Clocks. "Arabidopsis", Eds. Roberts J.A. and Anderson M.L. Sheffield: Sheffield Academic Press.
  12. Genoud T., Millar A.J., Nishizawa N., Kay S.A., Schafer E., Nagatani A. and Chua N.-H. (1998). An Arabidopsis mutant hypersensitive to red and far-red light signals. Plant Cell 10: 889-904.
  13. Dowson-Day M.J. and Millar A.J. (1999). Circadian dysfunction causes aberrant hypocotyl elongation patterns in Arabidopsis. Plant Journal 17, 63-71. PDF
  14. Millar A. J. (1999) Tansley Review: Biological clocks in Arabidopsis thaliana. New Phytologist 141, 175-197. PDF
  15. Swarup K., Alonso-Blanco C., Lynn, J.R., Michaels, S.D., Amasino, R.M., Koornneef, M.and Millar A.J. (1999) Natural  allelic variation identifies new genes in the Arabidopsis circadian system. Plant Journal 20, 67-77. PDF
  16. McWatters H., Dunlap J.C. and Millar A.J. (1999) Circadian rhythms: clocks for the real world. Current Biology 9, R633-R635. PDF
  17. *Bognár L.K., *Hall A., Ádám É., Thain S.C., **Nagy F. and **Millar A.J. (1999) The circadian clock controls the expression pattern of the circadian input photoreceptor, phytochrome B. Proc. Natl. Acad. Sci. USA 96, 14652-14657. *joint first authorship, **corresponding authors. PDF
  18. Murtas G. and Millar A.J. (2000) How plants tell the time. Current Opinion in Plant Biology 3, 43-47.
  19. Reed J.W.**, Nagpal P., Bastow R.M., Solomon K.S., Dowson-Day M.J., Elumalai R.P. and Millar A.J. (2000) Independent action of ELF3 and phyB to control hypocotyl elongation and flowering time. Plant Physiology 122, 1149-1160. **corresponding author. PDF
  20. Millar A.J. Clock proteins: Turned over after hours? (2000) Current Biology 10, R529-R531.
  21. Thain S.C., Hall A. and Millar A.J. (2000) Functional independence of circadian clocks that regulate plant gene expression. Current Biology, 10, 951-956. PDF

    Featured in: Science STKE Editors' Choice. CIRCADIAN RHYTHMS: Leaves Have More Than One Clock (24 September 2002) Sci. STKE 2002 (151), tw347. [DOI: 10.1126/stke.2002.151.tw347]
     
  22. *McWatters H.G., *Bastow R.M., Hall A., Millar A.J. (2000) The ELF3 zeitnehmer regulates light signalling to the circadian clock. Nature, 408, 716-720. *joint first authorship PDF

1991 through 1995

  1. Millar A.J. and Kay S.A. (1991). Circadian control of CAB gene transcription and mRNA accumulation in Arabidopsis. Plant Cell 3, 541-550. PDF
  2. Millar A.J., Short S.R., Chua N.-H. and Kay S.A. (1992). A novel circadian phenotype based on firefly luciferase expression in transgenic plants. Plant Cell 4, 1075-1084. PDF
  3. Kay S.A. and Millar A.J. (1992). Circadian-regulated gene transcription in Arabidopsis thaliana. Disc. Neurosci. 3, 103-105.
  4. Millar A.J., Short S.R., Hiratsuka K., Chua N.-H. and Kay S.A. (1992). Firefly luciferase as a reporter of regulated gene expression in plants. Plant Mol. Biol. Rep. 10, 324-337.
  5. Kay S.A. and Millar A.J. (1993). Circadian regulated CAB gene expression in higher plants. "The Molecular Genetics of Biological Rhythms", Ed. Young, M. New York: Marcel Dekker.
  6. Kay S.A., Millar A.J., Smith K.W., Anderson S.L., Brandes C., Hall J.C. (1994). Video Imaging of Regulated Firefly Luciferase Activity in Transgenic Plants and Drosophila. Promega Notes, 49, 22-27.
  7. Millar A.J., McGrath R. and Chua N.-H. (1994). Phytochrome phototransduction pathways. Annu. Rev. Genet., 28, 325-349.
  8. Millar A.J., Straume M., Chory J., Chua N.-H. and Kay S.A. (1995) The regulation of circadian period by phototransduction pathways in Arabidopsis. Science, 267, 1163-1166.
  9. Millar A.J., Carré I.A., Strayer C.A., Chua N.-H. and Kay S.A. (1995) Circadian clock mutants in Arabidopsis identified by luciferase imaging. Science, 267, 1161-1163.
  10. Millar A.J. and Kay S.A. (1995). New models in vogue for circadian clocks. Cell, 83, 361-365.

Last updated 13/07/09

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