Millar lab software download page
Note - some of our software is available from multiple sources and you may find a public repository such as Sourceforge more convenient than our web site.
Information on our mathematical models is available on the Models page.
Current resources:
 | BioDare2 for rhythm analysis and visualisation, all online and self-service. 2017-. Contact: biodare [@] ed.ac.uk |
| BioDare for Open Data sharing, rhythm analysis and visualisation, with detailed experiment description offline. 2009-. Contact: biodare [@] ed.ac.uk |
| PlaSMo model repository. Contact: Andrew Millar |
| SBSI model optimisation system, developed during the CSBE project. SBSI Sourceforge project. Contact: Andrew Millar. |
| qPMerge: Galaxy workflow for proteomics (especially phosphoproteomics) peptide merging, from Hindle et al. bioRxiv 2016. |
Legacy software, some available:
|
BRASS - MS
ExcelTM interface for estimation
of rhythmic properties from experimental time-series, using either FFT-NLLS or
mFourfit algorithms. Developed by Paul E.
Brown and others, 2002-2010. Replaced by BioDare/BioDare2. |
|
Circadian
modelling - User-friendly interface for numerical simulations using
mathematical models of biological clocks. Includes many published clock
models.
Developed by Paul E. Brown. |
|
MetamorphTM journals
- various image acquisition and analysis functions. Developed by Kieron
Edwards and others. |
|
Visualisation tools. Display moving plots
of 2 and 3D time series and limit cycles from our
2-loop and 3-loop Arabidopsis
clock models. These programs require
Matlab. Pre-recorded simulations are also available as .AVI files for those without Matlab.
Developed by Paul E. Brown. |
|
IRC analysis - powerful mathematical analysis of circadian clock models, with links to updated software from Warwick Systems Biology Centre. Developed by David Rand with Boris Shulgin, Paul E. Brown and others. |
Software on this site is provided free of charge for academic research without guarantees either explicit or implied, and subject to any license listed with or included with each package.
