Data for download
Most of our timeseries data are being disseminated from the ROBuST/TiMet/SynthSys data repository, BioDare, www.biodare.ed.ac.uk. Login public, password public gives access to the data.
License: The seven data sets directly
hyperlinked from this web page are made available under the
Public Domain Dedication and License version v1.0 whose full text can be found
at
http://opendatacommons.org/licenses/pddl/.
Data stored on the sites of other providers are subject to the licences of those providers.
The Models page may link to further data curated from the literature and used to constrain our models.
 | Quantitative timeseries of qRT-PCR data from Edwards
et al. Mol Syst Biol 2010 for key clock genes (CCA1, GI, TOC1) and
some output genes (SEX4, DPE2, FKF1, CO) relative to ACT2,
from a 50h timecourse at 2h sampling interval in one LD cycle then DD, or a
72h timecourse consisting of the same LD cycle then LL, at 22C.
ZIP
archive of XL files corresponding to figure panels. |
| Quantitative timeseries of various data on
Arabidopsis clock RNAs and proteins (CCA1, LHY, GI, TOC1, ZTL and the
PRR9, PRR7, PRR5), curated from the literature from 2000-2010,
and contributed by Alexandra Pokhilko in 2010. A subset of these data
were used to constrain her clock model, published in Pokhilko et al. Mol
Syst Biol 2010.
ZIP
archive of files in
SBSI
data format. |
| Quantitative timeseries data on the key genes and
proteins of the Arabidopsis photoperiod response pathway (CO, FT, FKF1),
curated from the literature from 2001-2009, and contributed by
Treenut Saithong in 2009.
ZIP
archive of files in
SBSI
data format. |
| Quantitative timeseries data on Arabidopsis clock
RNAs and LUC reporter gene data (CCA1, LHY, GI, TOC1, PRR9, PRR7),
curated from the literature from 2001-2009, and contributed by
Treenut Saithong in 2009. A subset of these data were used to develop a
model fitting procedure, and to constrain her clock model, submitted to
PLoSone in 2010.
ZIP archive of files in
SBSI
data format. |
| Quantitative timeseries of qRT-PCR data from Edwards et al. Plant Cell 2006 for key clock genes (CCA1, LHY, GI, TOC1, LUX) relative to ACT2, from a 48h timecourse at 2h sampling interval, starting from 24h under constant light at 27C. XL file. |
| Microarray data from Arabidopsis in constant light,
published in Edwards et al. Plant Cell 2006, see
PDF for details. .CEL
microarray data files are available from the
Affy service at NASC, now
alas discontinued to the detriment of the community, so check here
Link index to NASCarrays data on iPlant.
| ||
| Low-time-resolution quantitative timeseries of qRT-PCR data from Hall et al. Plant Cell 2003 for clock genes (CCA1, LHY, GI, TOC1) from a 24h timecourse from 12L12D to LL at 22C. XL file. |
| Older data that we really need to provide here: Phenotypic data on leaf movement rhythms in Recombinant Inbred Lines
|
